PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS63021.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 527aa    MW: 57696.3 Da    PI: 5.1363
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS63021.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS255.22.4e-781635262374
        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 v+ L++ Ae++++++++la+ +Larl+e+ +sp+g+p+qR+a+yf+eAL++ l+          p  ++ +++ +++++a+k+f  +sPi++fs +ta 
  EPS63021.1 163 VDELIRLAECFETNSAQLAHMILARLNERlRSPAGKPLQRIAFYFKEALQSLLTA--------APHASAGSSKIIQTIKAQKIFAAISPIPTFSSFTAG 253
                 678*************************99************************9........44444455679************************* PP

        GRAS 100 qaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp......egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                 qa+lea++g     vH++Dfdi+ G++W++++++ a+ +      ++ p lRi +v++   g ++e++ ++e+L++fA+el+++f+++++ ++++e  +
  EPS63021.1 254 QALLEAIDGGapVNVHVVDFDIGFGGHWAPFMKEVAENAqlhhktAPLPALRISAVVA--DGYETETNLIRENLTEFARELNIRFDIEFIPVRNFEHQS 350
                 *********966678*******************998776777667799*********..66****************************99******* PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleak.lpres.....ee 281
                 +++ r   gE+++V l+ +++r              +++ +++ sP++vv+v++e++   +++s+ + +++ le+ys l++s+ea+ + +++     ++
  EPS63021.1 351 FKAVRSIDGEKTVVLLSPSIFRHI---------GAGFMNDLRRRSPQLVVLVDNEVQAgyGTSSYRQTLINGLEFYSNLLESIEASnFTAAAgsggwDW 440
                 *********************998.........347*******************665449**********************6553444445588899 PP

        GRAS 282 rikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +k+E ++l ++i ++    g++         + r++l ++G++pv ls++a  qa++llr+v+++g++v + +++++l+W+drp+ ++SaWr
  EPS63021.1 441 IRKIETFVLYPKILEIMQSIGRR-------GTTVRDALAASGLRPVILSQFADVQADCLLRRVQVRGFHVVKPHAEMLLCWHDRPVAATSAWR 526
                 9*****************99997.......345589********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.091136506IPR005202Transcription factor GRAS
PfamPF035148.4E-76163526IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MKVPFITTGG GGHIASKTTI SSAVPPPPAY EPKSVLEIRG SPSPVTEKPS SAAAGDSSVR  60
PEGTESNHAL MNPQVEDWDW MTELGLNDDD DDGSSSPVSR REELPAVQYQ NLIDFPAGSF  120
DSGQFPEMEF GLLPDFPPAY GDSVEGLSGE LATGNWNAGF DFVDELIRLA ECFETNSAQL  180
AHMILARLNE RLRSPAGKPL QRIAFYFKEA LQSLLTAAPH ASAGSSKIIQ TIKAQKIFAA  240
ISPIPTFSSF TAGQALLEAI DGGAPVNVHV VDFDIGFGGH WAPFMKEVAE NAQLHHKTAP  300
LPALRISAVV ADGYETETNL IRENLTEFAR ELNIRFDIEF IPVRNFEHQS FKAVRSIDGE  360
KTVVLLSPSI FRHIGAGFMN DLRRRSPQLV VLVDNEVQAG YGTSSYRQTL INGLEFYSNL  420
LESIEASNFT AAAGSGGWDW IRKIETFVLY PKILEIMQSI GRRGTTVRDA LAASGLRPVI  480
LSQFADVQAD CLLRRVQVRG FHVVKPHAEM LLCWHDRPVA ATSAWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-1719652636375GRAS family transcription factor containing p
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012847887.10.0PREDICTED: scarecrow-like protein 15
TrEMBLS8CET20.0S8CET2_9LAMI; Uncharacterized protein
STRINGPGSC0003DMT4000330370.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83052230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-118GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]